Posted: Wednesday, February 7, 2018 9:17 PM
Employment Status:AF : Active : Regular : Full Time
Job Summary 13;
The Childrens Hospital of Philadelphia (CHOP) Research Institute is recruiting a Bioinformatics Engineer II in the Data Coordination and Analysis Team (DCAT) of the Bioinformatics Group in the Department of Biomedical and Health Informatics. This individual will support the management and analysis of genomic and phenotypic data within the CHOP Roberts Collaborative, which is at the forefront of pediatric genetics research and takes a multidisciplinary approach toward diagnostics, clinical management, consulting, therapeutics and research driven by the power of genetics. The successful candidate will have a pivotal role in helping to decode drivers of rare disease in children.
About DCAT: The DCAT team is looking to hire mission:driven professionals with experience in large:scale genomic and phenotypic data management, integration and analysis. Members of the team are involved in data processing and analysis locally and on the cloud to serve both internal and external large:scale projects using next:generation sequencing technologies. Team members are involved in highly visible research projects with large cross:disease and cross:institutional cohorts. Successful candidates will gain deep knowledge about important clinical and research phenotypes across a number of pediatric diseases. Members of the DCAT team work with stakeholders in large bioinformatics:driven projects and our Scientific Computing team to deliver analyzed results and data management solutions that can lead to publications and academic visibility connected to their work.
Job Responsibilities 13;
* Computational Environment Development and Optimization:
o Integrate large:scale bioinformatics pipelines into larger sustainable enterprise data processing solutions.
o Integrate large:scale bioinformatics high performance computing (HPC) capability into larger sustainable enterprise analytical solutions.
o Integrate large:scale bioinformatics storage frameworks into larger sustainable enterprise storage solutions.
o Lead the development and evolution of a robust heterogeneous UNIX, LINUX, OSX environment.
o Evaluate trends in bioinformatics data production and analysis and identify likely requirements for bioinformatics data processing and storage systems. Communicate value of trends/innovations to organization using metrics and forecasting.
o Implement best practices for bioinformatics processing, storage, and manipulation, and archiving of bioinformatics data
o Assist in modeling, development, and testing of databases (SQL / NoSQL)
o Implements programs for continuous assessment of commercial and open:source bioinformatics data processing solutions by applying structured benchmark evaluations.
* Assists in projects where needed by serving as engineering point, especially for solutions involving coordination of multiple disciplines.
* Documentation and Standardization:
o Under supervision, lead the development of a formal bioinformatics engineering plan and development roadmap.
o Supports policies and standards for data quality, completeness, and reproducibility.
o Supports policies and standards for performance benchmarking and system stability.
o Supports the execution of a robust data quality program, focused on transparency and reproducibility of results.
o Promotes sustainability and enterprise adoption through proactive documentation.
Required Education and Experience 13;
* BS/MS in computational discipline required. BS/MS in systems engineering is preferred.
* 3:10 years experience in a production clinical or research bioinformatics data processing role required.
* Extensive knowledge with high performance and parallel computing environments and data processing workflows essential.
* Extensive experience with data storage frameworks essential.
• Location: South Jersey
• Post ID: 53579812 southjersey